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Akihiro Y

- Research Program Mentor

PhD at New York University

Expertise

physics, systems neuroscience, microscopy, neural correlates of behavior

Bio

I am a postdoctoral scientist at HHMI Janelia Research Campus developing advanced microscopy systems to study neural correlates of behavior in freely behaving animals. My research combines electro-optics design with computational modeling to track neural activity and animal movement in real-time. With a Ph.D. in physics from New York University, I’m especially excited by research that blends fundamental physics with tool-building to enable new biological discoveries. Outside the lab, I enjoy hiking, cycling, exploring museums and visit historical sites. Beyond personal hobbies, I’m involved in STEM outreach and enjoy sharing science with students and people outside the lab.

Project ideas

Project ideas are meant to help inspire student thinking about their own project. Students are in the driver seat of their research and are free to use any or none of the ideas shared by their mentors.

Build a biophysical model of a neuron - Leaky Integrate-and-Fire

In this project, you will build a simple computational model of a neuron using the leaky integrate-and-fire (LIF) framework. This involves simulating how a neuron’s membrane voltage changes over time in response to input current, where the membrane “integrates” incoming signals but also “leaks” back toward its resting voltage. When the voltage crosses a threshold, the model generates a spike and resets, capturing the basic idea of neural firing in an intuitive way.

Building a Simple Animal Tracker from Smartphone Video

Scientists use artificial intelligence and machine learning to automatically track how animals move and behave from video. Instead of manually watching and measuring, computers can now identify key body parts (like a fish's head and tail, or a person's joints). In this project, you'll use state-of-the-art tools that researchers actually use in their labs with no coding experience required.

Coding skills

Python, MATLAB, Mathematica

Languages I know

Japanese

Teaching experience

1) As a teaching assistant, I have taught 2 physics lab courses for STEM majors and 1 introductory physics course (history of physics; physics and astronomy in the renaissance) for non-science majors at New York University. 2) As a learning assistant at University of Colorado, I have taught an introductory calculus-based physics course for first and second year undergraduate students.

Credentials

Work experience

HHMI Janelia Research Campus (2024 - Current)
postdoctoral scientist

Education

University of Colorado at Boulder
BS Bachelor of Science (2015)
Physics
New York University
PhD Doctor of Philosophy (2024)
physics, systems neuroscience

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